Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56513.1Hypothetical protein. (470 aa)    
Predicted Functional Partners:
OPJ56439.1
DNA-binding transcriptional activator PspC.
  
 
 0.914
OPJ56305.1
Hypothetical protein.
  
     0.761
OPJ56519.1
Hypothetical protein.
  
     0.759
OPJ56036.1
Blue-light-activated protein.
    
 
 0.726
OPJ56835.1
Hypothetical protein.
  
     0.696
OPJ56800.1
Hypothetical protein.
  
     0.679
oadG
Oxaloacetate decarboxylase gamma chain.
  
     0.616
OPJ56046.1
FlgN protein.
  
     0.592
rsgI
anti-sigma-I factor RsgI.
  
     0.574
yqiK
Inner membrane protein YqiK.
  
  
 0.570
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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