STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56516.1Hypothetical protein. (350 aa)    
Predicted Functional Partners:
OPJ56439.1
DNA-binding transcriptional activator PspC.
  
 
 0.947
OPJ56036.1
Blue-light-activated protein.
    
 
 0.802
wfgD
UDP-Glc:alpha-D-GlcNAc-diphosphoundecaprenol beta-1,3-glucosyltransferase WfgD.
       0.548
pgdA_3
peptidoglycan-N-acetylglucosamine deacetylase.
       0.515
yqiK
Inner membrane protein YqiK.
  
  
 0.510
OPJ56517.1
Transposase DDE domain protein.
       0.485
degS
Signal transduction histidine-protein kinase/phosphatase DegS.
  
    0.480
OPJ56440.1
Hypothetical protein.
  
  
 0.476
OPJ55444.1
Tetratricopeptide repeat protein.
  
  
 0.423
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.