Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55767.1YtxC-like family protein. (265 aa)    
Predicted Functional Partners:
OPJ55070.1
Hypothetical protein.
  
     0.744
spoIIIAE
Stage III sporulation protein AE precursor.
  
     0.731
OPJ55090.1
Spore cortex protein YabQ.
  
     0.705
OPJ54801.1
LysM domain protein.
  
     0.698
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.696
OPJ55434.1
MazG-like family protein.
  
     0.690
OPJ56062.1
Hypothetical protein.
  
     0.683
OPJ55766.1
Hypothetical protein.
       0.670
spoIIGA
Sporulation sigma-E factor-processing peptidase; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
     0.660
OPJ56765.1
Hypothetical protein.
  
     0.654
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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