mglA_2 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

mglA_2

Galactose/methyl galactoside import ATP-binding protein MglA. (516 aa)

Predicted Functional Partners:

rbsC_2

0.999

OPJ55769.1

0.999

tmpC

0.995

cdd

0.502

OPJ55767.1

0.446

pdp

0.417

deoC

0.415

pncC

0.405

rbsC_1

0.400

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55767.1	OPJ55769.1	CLOTH_09450	CLOTH_09470	YtxC-like family protein.	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.448
OPJ55767.1	mglA_2	CLOTH_09450	CLOTH_09480	YtxC-like family protein.	Galactose/methyl galactoside import ATP-binding protein MglA.	0.446
OPJ55767.1	rbsC_2	CLOTH_09450	CLOTH_09460	YtxC-like family protein.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.448
OPJ55769.1	OPJ55767.1	CLOTH_09470	CLOTH_09450	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	YtxC-like family protein.	0.448
OPJ55769.1	cdd	CLOTH_09470	CLOTH_02780	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.400
OPJ55769.1	mglA_2	CLOTH_09470	CLOTH_09480	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Galactose/methyl galactoside import ATP-binding protein MglA.	0.999
OPJ55769.1	pdp	CLOTH_09470	CLOTH_02510	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Pyrimidine-nucleoside phosphorylase.	0.417
OPJ55769.1	pncC	CLOTH_09470	CLOTH_01150	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.	0.410
OPJ55769.1	rbsC_2	CLOTH_09470	CLOTH_09460	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.	0.999
OPJ55769.1	tmpC	CLOTH_09470	CLOTH_09490	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	Membrane lipoprotein TmpC precursor.	0.987
cdd	OPJ55769.1	CLOTH_02780	CLOTH_09470	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.400
cdd	deoC	CLOTH_02780	CLOTH_01240	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	0.768
cdd	mglA_2	CLOTH_02780	CLOTH_09480	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Galactose/methyl galactoside import ATP-binding protein MglA.	0.502
cdd	pdp	CLOTH_02780	CLOTH_02510	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Pyrimidine-nucleoside phosphorylase.	0.996
deoC	cdd	CLOTH_01240	CLOTH_02780	Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.768
deoC	mglA_2	CLOTH_01240	CLOTH_09480	Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	Galactose/methyl galactoside import ATP-binding protein MglA.	0.415
deoC	pdp	CLOTH_01240	CLOTH_02510	Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.	Pyrimidine-nucleoside phosphorylase.	0.930
mglA_2	OPJ55767.1	CLOTH_09480	CLOTH_09450	Galactose/methyl galactoside import ATP-binding protein MglA.	YtxC-like family protein.	0.446
mglA_2	OPJ55769.1	CLOTH_09480	CLOTH_09470	Galactose/methyl galactoside import ATP-binding protein MglA.	Ribose ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.	0.999
mglA_2	cdd	CLOTH_09480	CLOTH_02780	Galactose/methyl galactoside import ATP-binding protein MglA.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.502