Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
nfo_2Endonuclease 4. (257 aa)    
Predicted Functional Partners:
fruA_2
PTS system fructose-specific EIIBC component.
  
 
  0.873
spsB
Signal peptidase IB; Belongs to the peptidase S26 family.
  
    0.793
OPJ55807.1
Hypothetical protein.
       0.786
OPJ55169.1
Hypothetical protein.
 
   
 0.781
OPJ55619.1
Hypothetical protein.
  
     0.771
ubiE
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE.
  
     0.770
OPJ55366.1
Hypothetical protein.
  
     0.770
OPJ56341.1
Hypothetical protein.
  
     0.768
OPJ57151.1
UvrD/REP helicase.
  
     0.766
OPJ55938.1
Flagellin N-methylase.
  
     0.762
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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