Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prsWProtease PrsW. (235 aa)    
Predicted Functional Partners:
OPJ55811.1
Putative peptidoglycan binding domain protein.
       0.558
OPJ56827.1
Hypothetical protein.
 
     0.546
yaaH_3
Spore germination protein YaaH.
       0.544
OPJ56305.1
Hypothetical protein.
  
     0.499
OPJ56056.1
Anti-sigma28 factor FlgM.
  
     0.495
OPJ57089.1
Hypothetical protein.
  
     0.447
OPJ56046.1
FlgN protein.
  
     0.434
polC_3
DNA polymerase III PolC-type.
  
     0.426
OPJ57224.1
Hypothetical protein.
  
     0.417
OPJ55237.1
Hypothetical protein.
  
     0.414
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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