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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55811.1Putative peptidoglycan binding domain protein. (416 aa)    
Predicted Functional Partners:
aprX
Serine protease AprX; Belongs to the peptidase S8 family.
  
 0.811
yaaH_3
Spore germination protein YaaH.
       0.780
ssbA_1
Single-stranded DNA-binding protein A.
  
     0.674
OPJ54801.1
LysM domain protein.
 
   
 0.639
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
    0.617
spoVT
Stage V sporulation protein T.
  
     0.607
OPJ56936.1
Hypothetical protein; Transcription termination factor Rho.
  
     0.580
prsW
Protease PrsW.
       0.558
spoIIID
Stage III sporulation protein D.
  
   
 0.557
spoVAD
Stage V sporulation protein AD.
  
   
 0.555
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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