Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ55811.1Putative peptidoglycan binding domain protein. (416 aa)    
Predicted Functional Partners:
aprX
Serine protease AprX; Belongs to the peptidase S8 family.
 
  
 0.811
yaaH_3
Spore germination protein YaaH.
       0.778
ssbA_1
Single-stranded DNA-binding protein A.
  
     0.674
OPJ54801.1
LysM domain protein.
 
     0.636
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.617
spoVT
Stage V sporulation protein T.
  
     0.607
OPJ56936.1
Hypothetical protein; Transcription termination factor Rho.
  
     0.580
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
    
 0.578
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
    
 0.578
spoVAD
Stage V sporulation protein AD.
  
   
 0.573
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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