Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
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Co-expression
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[Homology]
Score
aprXSerine protease AprX; Belongs to the peptidase S8 family. (1083 aa)    
Predicted Functional Partners:
OPJ55811.1
Putative peptidoglycan binding domain protein.
 
  
 0.811
OPJ54801.1
LysM domain protein.
  
  
 0.750
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.712
OPJ56941.1
Stage III sporulation protein SpoIIIAF.
  
     0.706
yaaH_1
Spore germination protein YaaH.
 
 
 0.702
nfo_2
Endonuclease 4.
  
     0.660
OPJ55070.1
Hypothetical protein.
  
     0.644
OPJ56341.1
Hypothetical protein.
 
   
 0.643
OPJ57307.1
Hypothetical protein.
  
 0.634
yerB
Putative lipoprotein YerB precursor.
  
 0.634
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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