Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OPJ54791.1 | OPJ55825.1 | CLOTH_19100 | CLOTH_10030 | Permease family protein. | Nicotianamine synthase protein. | 0.644 |
| OPJ54791.1 | mprF | CLOTH_19100 | CLOTH_10020 | Permease family protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.514 |
| OPJ55821.1 | OPJ55825.1 | CLOTH_09990 | CLOTH_10030 | Putative two-component membrane permease complex subunit. | Nicotianamine synthase protein. | 0.463 |
| OPJ55821.1 | mprF | CLOTH_09990 | CLOTH_10020 | Putative two-component membrane permease complex subunit. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.463 |
| OPJ55821.1 | pgsA_2 | CLOTH_09990 | CLOTH_10010 | Putative two-component membrane permease complex subunit. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.465 |
| OPJ55821.1 | sdpR_1 | CLOTH_09990 | CLOTH_10000 | Putative two-component membrane permease complex subunit. | Transcriptional repressor SdpR. | 0.797 |
| OPJ55825.1 | OPJ54791.1 | CLOTH_10030 | CLOTH_19100 | Nicotianamine synthase protein. | Permease family protein. | 0.644 |
| OPJ55825.1 | OPJ55821.1 | CLOTH_10030 | CLOTH_09990 | Nicotianamine synthase protein. | Putative two-component membrane permease complex subunit. | 0.463 |
| OPJ55825.1 | OPJ55827.1 | CLOTH_10030 | CLOTH_10050 | Nicotianamine synthase protein. | FeoA domain protein. | 0.655 |
| OPJ55825.1 | feoB_1 | CLOTH_10030 | CLOTH_10040 | Nicotianamine synthase protein. | Ferrous iron transport protein B. | 0.836 |
| OPJ55825.1 | mprF | CLOTH_10030 | CLOTH_10020 | Nicotianamine synthase protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.957 |
| OPJ55825.1 | pgsA_2 | CLOTH_10030 | CLOTH_10010 | Nicotianamine synthase protein. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.812 |
| OPJ55825.1 | sdpR_1 | CLOTH_10030 | CLOTH_10000 | Nicotianamine synthase protein. | Transcriptional repressor SdpR. | 0.489 |
| OPJ55827.1 | OPJ55825.1 | CLOTH_10050 | CLOTH_10030 | FeoA domain protein. | Nicotianamine synthase protein. | 0.655 |
| OPJ55827.1 | feoB_1 | CLOTH_10050 | CLOTH_10040 | FeoA domain protein. | Ferrous iron transport protein B. | 0.893 |
| OPJ55827.1 | mprF | CLOTH_10050 | CLOTH_10020 | FeoA domain protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.654 |
| OPJ55827.1 | pgsA_2 | CLOTH_10050 | CLOTH_10010 | FeoA domain protein. | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. | 0.572 |
| OPJ56082.1 | mprF | CLOTH_12600 | CLOTH_10020 | Hypothetical protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.554 |
| OPJ56265.1 | mprF | CLOTH_06690 | CLOTH_10020 | Hypothetical protein. | Hypothetical protein; Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms. | 0.501 |
| OPJ56265.1 | rbr3A | CLOTH_06690 | CLOTH_06700 | Hypothetical protein. | Reverse rubrerythrin-1. | 0.927 |
page 1 of 3