Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
ydaM_1Putative diguanylate cyclase YdaM. (334 aa)    
Predicted Functional Partners:
cph2
Phytochrome-like protein cph2.
 0.998
OPJ56036.1
Blue-light-activated protein.
 0.997
kinE
Sporulation kinase E.
 
 0.994
gmr
Cyclic di-GMP phosphodiesterase Gmr.
 
0.994
ydaM_2
Putative diguanylate cyclase YdaM.
 
0.978
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
   
 0.934
rpfG_3
Cyclic di-GMP phosphodiesterase response regulator RpfG.
 
0.931
cheY_1
Chemotaxis protein CheY.
  
 0.901
cheA
Chemotaxis protein CheA.
  
 
 0.896
relA
GTP pyrophosphokinase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
    
 0.887
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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