STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55840.1Putative ABC transporter ATP-binding protein. (582 aa)    
Predicted Functional Partners:
OPJ55841.1
Putative ABC transporter ATP-binding protein.
 
   
0.892
ytrB
ABC transporter ATP-binding protein YtrB.
  
 0.733
ecsA_1
ABC-type transporter ATP-binding protein EcsA.
  
 0.668
ecsA_2
ABC-type transporter ATP-binding protein EcsA.
  
0.649
OPJ55150.1
Fluoroquinolones export ATP-binding proteinc.
 
0.645
drrA
Daunorubicin/doxorubicin resistance ATP-binding protein DrrA.
 
 
0.631
OPJ55444.1
Tetratricopeptide repeat protein.
    
 0.613
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
   
 0.583
ydaM_1
Putative diguanylate cyclase YdaM.
     
 0.547
sodB
Superoxide dismutase.
    
 
 0.527
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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