STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55844.1Hypothetical protein. (207 aa)    
Predicted Functional Partners:
msmE
Multiple sugar-binding protein precursor.
 
  
 0.839
xynB
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
     0.836
xylB
Xylulose kinase.
 
     0.736
sugB
Trehalose transport system permease protein SugB.
 
  
 0.694
xylA
Xylose isomerase; Belongs to the xylose isomerase family.
 
     0.685
ypdA_2
Sensor histidine kinase YpdA.
 
    0.684
lacF_1
Lactose transport system permease protein LacF.
 
    0.676
OPJ55851.1
Putative response regulatory protein.
 
     0.550
OPJ56475.1
Hypothetical protein.
  
     0.491
OPJ57026.1
dUTPase.
  
     0.409
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.