Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
sugBTrehalose transport system permease protein SugB. (300 aa)    
Predicted Functional Partners:
msmE
Multiple sugar-binding protein precursor.
 
 0.999
malF
Maltose transport system permease protein MalF.
 
 0.998
lacF_1
Lactose transport system permease protein LacF.
 
 0.997
ugpC_2
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
 
 0.997
malX_2
Maltose/maltodextrin-binding protein precursor.
 
  
 0.944
xynB
Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
    0.699
OPJ55844.1
Hypothetical protein.
 
  
 0.694
malG
Maltose transport system permease protein MalG.
  
  
0.652
ugpC_1
Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.
  
  
 0.648
xylB
Xylulose kinase.
 
  
 0.623
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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