Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ytrBABC transporter ATP-binding protein YtrB. (281 aa)    
Predicted Functional Partners:
ytrA_1
HTH-type transcriptional repressor YtrA.
 
  
 0.963
OPJ55864.1
Hypothetical protein.
       0.778
OPJ56795.1
ABC-2 family transporter protein.
  
 
 0.675
ytrA_2
HTH-type transcriptional repressor YtrA.
 
  
 0.623
OPJ56794.1
ABC-2 family transporter protein.
  
 
 0.612
malF
Maltose transport system permease protein MalF.
    
 0.586
OPJ55840.1
Putative ABC transporter ATP-binding protein.
  
 0.566
atpC
ATP synthase epsilon chain, sodium ion specific; Produces ATP from ADP in the presence of a proton gradient across the membrane.
   
   0.552
OPJ55149.1
Fluoroquinolones export permease proteinc.
  
 
  0.514
atpD
ATP synthase subunit beta; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.
    
   0.485
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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