STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
albA_2Antilisterial bacteriocin subtilosin biosynthesis protein AlbA. (429 aa)    
Predicted Functional Partners:
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
  0.870
ecsA_1
ABC-type transporter ATP-binding protein EcsA.
 
 
  0.852
tldD
Metalloprotease TldD.
     
 0.782
OPJ55867.1
Hypothetical protein.
       0.773
OPJ55869.1
Hypothetical protein.
       0.773
nasF
uroporphyrinogen-III C-methyltransferase.
 
  
 0.770
ydaM_1
Putative diguanylate cyclase YdaM.
   
 0.645
nifJ
Pyruvate-flavodoxin oxidoreductase.
     
 0.609
ydaM_2
Putative diguanylate cyclase YdaM.
     
 0.548
kinE
Sporulation kinase E.
 
 
 0.510
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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