Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tnpR_3Transposon Tn3 resolvase. (443 aa)    
Predicted Functional Partners:
tnpR_4
Transposon Tn3 resolvase.
 
    
0.791
OPJ55877.1
Holin family protein.
 
  
 0.661
parB_1
Putative chromosome-partitioning protein ParB; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.645
OPJ56221.1
Hypothetical protein.
 
     0.554
OPJ55880.1
Prophage endopeptidase tail.
 
     0.544
OPJ55881.1
Phage tail protein.
 
     0.528
OPJ55897.1
Hypothetical protein.
 
     0.528
dpnA
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.521
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
       0.520
OPJ55882.1
Hypothetical protein.
 
     0.518
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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