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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpR_3Transposon Tn3 resolvase. (443 aa)    
Predicted Functional Partners:
tnpR_4
Transposon Tn3 resolvase.
 
    
0.792
parB_1
Putative chromosome-partitioning protein ParB; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.673
OPJ55877.1
Holin family protein.
 
    0.656
dpnA
Modification methylase DpnIIB; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.559
OPJ56221.1
Hypothetical protein.
 
     0.553
OPJ55880.1
Prophage endopeptidase tail.
 
     0.540
OPJ55897.1
Hypothetical protein.
 
     0.528
OPJ55881.1
Phage tail protein.
 
     0.525
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
       0.519
OPJ55882.1
Hypothetical protein.
 
     0.518
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.