Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55877.1Holin family protein. (136 aa)    
Predicted Functional Partners:
OPJ55882.1
Hypothetical protein.
 
    0.853
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
 
     0.795
OPJ55881.1
Phage tail protein.
 
    0.794
OPJ55880.1
Prophage endopeptidase tail.
 
    0.791
OPJ55876.1
Hypothetical protein.
  
    0.779
OPJ55878.1
Hypothetical protein.
  
    0.760
OPJ55879.1
Hypothetical protein.
  
    0.737
tnpR_3
Transposon Tn3 resolvase.
 
  
 0.661
OPJ55885.1
Hypothetical protein.
 
  
 0.644
tnpR_4
Transposon Tn3 resolvase.
 
  
 0.638
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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