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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55878.1Hypothetical protein. (562 aa)    
Predicted Functional Partners:
OPJ55879.1
Hypothetical protein.
  
    0.806
OPJ55881.1
Phage tail protein.
  
    0.795
OPJ55880.1
Prophage endopeptidase tail.
  
    0.794
OPJ55882.1
Hypothetical protein.
       0.792
OPJ55877.1
Holin family protein.
  
    0.770
OPJ55876.1
Hypothetical protein.
       0.746
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
       0.719
OPJ55883.1
Hypothetical protein.
       0.481
tnpR_3
Transposon Tn3 resolvase.
       0.472
tnpR_4
Transposon Tn3 resolvase.
       0.472
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.