OPJ55886.1 protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

OPJ55886.1

Hypothetical protein. (112 aa)

Predicted Functional Partners:

OPJ55885.1

0.971

OPJ55887.1

0.958

OPJ55888.1

0.956

OPJ55889.1

0.946

OPJ55891.1

0.918

OPJ55895.1

0.897

OPJ55881.1

0.855

OPJ55880.1

0.839

OPJ55882.1

0.838

OPJ55883.1

0.828

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
OPJ55880.1	OPJ55881.1	CLOTH_10580	CLOTH_10590	Prophage endopeptidase tail.	Phage tail protein.	0.985
OPJ55880.1	OPJ55882.1	CLOTH_10580	CLOTH_10600	Prophage endopeptidase tail.	Hypothetical protein.	0.990
OPJ55880.1	OPJ55883.1	CLOTH_10580	CLOTH_10610	Prophage endopeptidase tail.	Hypothetical protein.	0.494
OPJ55880.1	OPJ55885.1	CLOTH_10580	CLOTH_10630	Prophage endopeptidase tail.	Hypothetical protein.	0.831
OPJ55880.1	OPJ55886.1	CLOTH_10580	CLOTH_10640	Prophage endopeptidase tail.	Hypothetical protein.	0.839
OPJ55880.1	OPJ55888.1	CLOTH_10580	CLOTH_10660	Prophage endopeptidase tail.	Phage head-tail joining protein.	0.831
OPJ55880.1	OPJ55889.1	CLOTH_10580	CLOTH_10670	Prophage endopeptidase tail.	Phage gp6-like head-tail connector protein.	0.975
OPJ55880.1	OPJ55891.1	CLOTH_10580	CLOTH_10690	Prophage endopeptidase tail.	Phage capsid family protein.	0.834
OPJ55880.1	OPJ55895.1	CLOTH_10580	CLOTH_10730	Prophage endopeptidase tail.	Phage terminase, small subunit.	0.748
OPJ55881.1	OPJ55880.1	CLOTH_10590	CLOTH_10580	Phage tail protein.	Prophage endopeptidase tail.	0.985
OPJ55881.1	OPJ55882.1	CLOTH_10590	CLOTH_10600	Phage tail protein.	Hypothetical protein.	0.980
OPJ55881.1	OPJ55883.1	CLOTH_10590	CLOTH_10610	Phage tail protein.	Hypothetical protein.	0.510
OPJ55881.1	OPJ55885.1	CLOTH_10590	CLOTH_10630	Phage tail protein.	Hypothetical protein.	0.874
OPJ55881.1	OPJ55886.1	CLOTH_10590	CLOTH_10640	Phage tail protein.	Hypothetical protein.	0.855
OPJ55881.1	OPJ55888.1	CLOTH_10590	CLOTH_10660	Phage tail protein.	Phage head-tail joining protein.	0.816
OPJ55881.1	OPJ55889.1	CLOTH_10590	CLOTH_10670	Phage tail protein.	Phage gp6-like head-tail connector protein.	0.941
OPJ55881.1	OPJ55891.1	CLOTH_10590	CLOTH_10690	Phage tail protein.	Phage capsid family protein.	0.823
OPJ55881.1	OPJ55895.1	CLOTH_10590	CLOTH_10730	Phage tail protein.	Phage terminase, small subunit.	0.738
OPJ55882.1	OPJ55880.1	CLOTH_10600	CLOTH_10580	Hypothetical protein.	Prophage endopeptidase tail.	0.990
OPJ55882.1	OPJ55881.1	CLOTH_10600	CLOTH_10590	Hypothetical protein.	Phage tail protein.	0.980