Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
OPJ55891.1Phage capsid family protein. (429 aa)    
Predicted Functional Partners:
OPJ55889.1
Phage gp6-like head-tail connector protein.
 
 
 0.961
OPJ55893.1
Phage portal protein.
 
 
 
 0.957
OPJ55888.1
Phage head-tail joining protein.
 
 
 0.956
OPJ55894.1
Phage terminase.
 
     0.943
OPJ55895.1
Phage terminase, small subunit.
 
   
 0.920
OPJ55886.1
Hypothetical protein.
 
    0.918
OPJ55885.1
Hypothetical protein.
 
    0.906
clpP1_2
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
 
    0.878
OPJ55880.1
Prophage endopeptidase tail.
 
    0.828
OPJ55881.1
Phage tail protein.
 
    0.825
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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