Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55896.1Hypothetical protein. (71 aa)    
Predicted Functional Partners:
OPJ55897.1
Hypothetical protein.
       0.784
OPJ55895.1
Phage terminase, small subunit.
       0.629
OPJ55894.1
Phage terminase.
       0.618
OPJ55893.1
Phage portal protein.
       0.602
clpP1_2
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
       0.590
OPJ55898.1
Hypothetical protein.
       0.548
OPJ55891.1
Phage capsid family protein.
       0.539
OPJ55890.1
Hypothetical protein.
       0.520
OPJ55885.1
Hypothetical protein.
       0.439
OPJ55886.1
Hypothetical protein.
       0.439
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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