Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55898.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
OPJ55899.1
AIG2-like family protein.
       0.587
OPJ55896.1
Hypothetical protein.
       0.548
OPJ55897.1
Hypothetical protein.
       0.535
parB_1
Putative chromosome-partitioning protein ParB; Belongs to the N(4)/N(6)-methyltransferase family.
       0.517
OPJ55895.1
Phage terminase, small subunit.
       0.444
OPJ55894.1
Phage terminase.
       0.439
OPJ55893.1
Phage portal protein.
       0.415
OPJ55900.1
Putative amidoligase enzyme.
       0.404
clpP1_2
ATP-dependent Clp protease proteolytic subunit 1; Belongs to the peptidase S14 family.
       0.403
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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