Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ55900.1Putative amidoligase enzyme. (307 aa)    
Predicted Functional Partners:
OPJ55899.1
AIG2-like family protein.
 
    0.883
nasF
uroporphyrinogen-III C-methyltransferase.
  
  
 0.787
OPJ56198.1
AIG2-like family protein.
 
    0.784
OPJ56196.1
Hypothetical protein.
 
    0.742
hhaIM
Modification methylase HhaI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
     0.653
OPJ56195.1
Hypothetical protein.
 
     0.636
OPJ56219.1
Hypothetical protein.
  
    0.628
gltD
Glutamate synthase small chain.
  
 
 0.622
OPJ56218.1
N-acetylmuramoyl-L-alanine amidase.
  
     0.617
OPJ55903.1
Hypothetical protein.
 
     0.617
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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