Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
OPJ55903.1Hypothetical protein. (141 aa)    
Predicted Functional Partners:
hhaIM
Modification methylase HhaI; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family.
 
   
 0.940
parB_1
Putative chromosome-partitioning protein ParB; Belongs to the N(4)/N(6)-methyltransferase family.
 
     0.887
OPJ55891.1
Phage capsid family protein.
 
     0.804
OPJ55895.1
Phage terminase, small subunit.
 
     0.798
OPJ55882.1
Hypothetical protein.
 
     0.791
OPJ55880.1
Prophage endopeptidase tail.
 
     0.780
OPJ55894.1
Phage terminase.
 
     0.770
OPJ55916.1
HTH domain protein.
  
     0.757
OPJ55881.1
Phage tail protein.
 
     0.749
OPJ55888.1
Phage head-tail joining protein.
 
     0.744
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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