STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55911.1PD-(D/E)XK nuclease superfamily protein. (480 aa)    
Predicted Functional Partners:
OPJ55909.1
DNA polymerase II.
 
     0.943
OPJ55912.1
VRR-NUC domain protein.
 
     0.904
OPJ55913.1
Hypothetical protein; SNF2 family N-terminal domain.
 
     0.897
OPJ55908.1
Hypothetical protein.
 
     0.876
OPJ55914.1
Hypothetical protein; BRO family, N-terminal domain.
 
     0.846
OPJ55916.1
HTH domain protein.
 
   
 0.841
OPJ55910.1
Hypothetical protein.
       0.779
OPJ55906.1
Hypothetical protein.
 
     0.774
OPJ55897.1
Hypothetical protein.
  
     0.752
OPJ55903.1
Hypothetical protein.
  
     0.608
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (40%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.