Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55912.1VRR-NUC domain protein. (121 aa)    
Predicted Functional Partners:
OPJ55913.1
Hypothetical protein; SNF2 family N-terminal domain.
 
    0.947
OPJ55911.1
PD-(D/E)XK nuclease superfamily protein.
 
     0.906
OPJ55909.1
DNA polymerase II.
 
    0.897
OPJ55914.1
Hypothetical protein; BRO family, N-terminal domain.
 
    0.873
OPJ55916.1
HTH domain protein.
 
    0.852
OPJ55908.1
Hypothetical protein.
 
     0.849
OPJ55897.1
Hypothetical protein.
  
     0.710
OPJ55906.1
Hypothetical protein.
 
    0.636
OPJ55910.1
Hypothetical protein.
       0.557
OPJ55903.1
Hypothetical protein.
  
     0.546
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.