Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OPJ55934.1Hypothetical protein. (361 aa)    
Predicted Functional Partners:
OPJ56036.1
Blue-light-activated protein.
    
 0.763
ribBA
Riboflavin biosynthesis protein RibBA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
  
 
 0.760
yjbM
GTP pyrophosphokinase YjbM.
    
  0.596
kinE
Sporulation kinase E.
     
 0.564
OPJ55933.1
Putative multidrug export ATP-binding/permease protein.
  
    0.542
cpdA_1
3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA.
       0.523
rsxA
Electron transport complex subunit RsxA; Part of a membrane-bound complex that couples electron transfer with translocation of ions across the membrane.
   
    0.512
stp
Serine/threonine phosphatase stp.
  
 
 0.481
spoVD_1
Stage V sporulation protein D.
  
 
 0.402
OPJ55932.1
Hypothetical protein.
       0.400
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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