Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55940.1Hypothetical protein. (114 aa)    
Predicted Functional Partners:
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
  
     0.773
hemN_1
Oxygen-independent coproporphyrinogen-III oxidase-like protein.
       0.773
OPJ55237.1
Hypothetical protein.
  
     0.753
OPJ55169.1
Hypothetical protein.
  
     0.747
nfo_2
Endonuclease 4.
  
     0.742
OPJ57006.1
Hypothetical protein; Belongs to the UPF0342 family.
  
     0.727
OPJ55938.1
Flagellin N-methylase.
  
     0.724
OPJ55979.1
Hypothetical protein.
  
     0.710
OPJ56941.1
Stage III sporulation protein SpoIIIAF.
  
     0.705
OPJ55798.1
Endodeoxyribonuclease RusA.
  
     0.697
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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