Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dppAPeriplasmic dipeptide transport protein precursor. (830 aa)    
Predicted Functional Partners:
gsiC
Glutathione transport system permease protein GsiC.
 
 0.971
gsiD
Glutathione transport system permease protein GsiD.
 
 0.971
oppB
Oligopeptide transport system permease protein OppB.
 
 0.959
oppC
Oligopeptide transport system permease protein OppC.
 
 0.959
kinE
Sporulation kinase E.
  
 0.920
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.847
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 0.843
oppD_1
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 0.803
oppF_1
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 0.792
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
    0.778
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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