STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dppAPeriplasmic dipeptide transport protein precursor. (830 aa)    
Predicted Functional Partners:
gsiC
Glutathione transport system permease protein GsiC.
 
 0.908
kinE
Sporulation kinase E.
  
 0.908
gsiD
Glutathione transport system permease protein GsiD.
 0.906
oppB
Oligopeptide transport system permease protein OppB.
 
 0.868
oppC
Oligopeptide transport system permease protein OppC.
 0.866
cheA
Chemotaxis protein CheA.
 
 0.833
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
    0.804
OPJ56036.1
Blue-light-activated protein.
  
 0.791
oppD_2
Oligopeptide transport ATP-binding protein OppD; Belongs to the ABC transporter superfamily.
 
 
 0.773
oppF_2
Oligopeptide transport ATP-binding protein OppF; Belongs to the ABC transporter superfamily.
 
 
 0.767
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.