Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| OPJ56057.1 | cshA_1 | CLOTH_12350 | CLOTH_02980 | Hypothetical protein. | DEAD-box ATP-dependent RNA helicase CshA. | 0.549 |
| OPJ56057.1 | cshA_2 | CLOTH_12350 | CLOTH_16330 | Hypothetical protein. | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | 0.549 |
| OPJ56057.1 | ppiB | CLOTH_12350 | CLOTH_11270 | Hypothetical protein. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.924 |
| cdr | dnaJ | CLOTH_09950 | CLOTH_13630 | Coenzyme A disulfide reductase. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.876 |
| cdr | glpE | CLOTH_09950 | CLOTH_16410 | Coenzyme A disulfide reductase. | Thiosulfate sulfurtransferase GlpE. | 0.897 |
| cdr | ppiB | CLOTH_09950 | CLOTH_11270 | Coenzyme A disulfide reductase. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.898 |
| cdr | sodB | CLOTH_09950 | CLOTH_00350 | Coenzyme A disulfide reductase. | Superoxide dismutase. | 0.952 |
| cshA_1 | OPJ56057.1 | CLOTH_02980 | CLOTH_12350 | DEAD-box ATP-dependent RNA helicase CshA. | Hypothetical protein. | 0.549 |
| cshA_1 | dnaJ | CLOTH_02980 | CLOTH_13630 | DEAD-box ATP-dependent RNA helicase CshA. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.817 |
| cshA_1 | fusA_2 | CLOTH_02980 | CLOTH_19000 | DEAD-box ATP-dependent RNA helicase CshA. | Elongation factor G. | 0.944 |
| cshA_1 | htpG | CLOTH_02980 | CLOTH_14130 | DEAD-box ATP-dependent RNA helicase CshA. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.421 |
| cshA_1 | ppiB | CLOTH_02980 | CLOTH_11270 | DEAD-box ATP-dependent RNA helicase CshA. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.975 |
| cshA_1 | rph | CLOTH_02980 | CLOTH_07120 | DEAD-box ATP-dependent RNA helicase CshA. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.866 |
| cshA_2 | OPJ56057.1 | CLOTH_16330 | CLOTH_12350 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Hypothetical protein. | 0.549 |
| cshA_2 | dnaJ | CLOTH_16330 | CLOTH_13630 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | 0.817 |
| cshA_2 | fusA_2 | CLOTH_16330 | CLOTH_19000 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Elongation factor G. | 0.944 |
| cshA_2 | htpG | CLOTH_16330 | CLOTH_14130 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Chaperone protein HtpG; Molecular chaperone. Has ATPase activity. | 0.421 |
| cshA_2 | ppiB | CLOTH_16330 | CLOTH_11270 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family. | 0.971 |
| cshA_2 | rph | CLOTH_16330 | CLOTH_07120 | DEAD-box ATP-dependent RNA helicase CshA; Belongs to the DEAD box helicase family. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.866 |
| dnaJ | cdr | CLOTH_13630 | CLOTH_09950 | Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...] | Coenzyme A disulfide reductase. | 0.876 |
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