STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livFHigh-affinity branched-chain amino acid transport ATP-binding protein LivF. (235 aa)    
Predicted Functional Partners:
OPJ55960.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.993
braC
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.991
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
0.990
fliM
Flagellar motor switch protein FliM.
   
   0.645
kinE
Sporulation kinase E.
     
 0.597
OPJ55297.1
GH3 auxin-responsive promoter.
  
 
  0.494
fapR
Transcription factor FapR.
    
  0.425
ctfB
Butyrate--acetoacetate CoA-transferase subunit B.
    
  0.425
ctfA
Butyrate--acetoacetate CoA-transferase subunit A.
    
  0.424
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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