Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
lptBLipopolysaccharide export system ATP-binding protein LptB. (258 aa)    
Predicted Functional Partners:
OPJ55960.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
livH
High-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family.
 
 
 0.999
braC
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.994
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
0.991
OPJ56382.1
NMT1/THI5 like protein.
    
 0.454
ssuC
Putative aliphatic sulfonates transport permease protein SsuC.
    
  0.432
carB
Carbamoyl-phosphate synthase large chain.
  
    0.410
oppC
Oligopeptide transport system permease protein OppC.
    
 0.409
gsiD
Glutathione transport system permease protein GsiD.
    
 0.409
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
       0.408
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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