STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
livHHigh-affinity branched-chain amino acid transport system permease protein LivH; Belongs to the binding-protein-dependent transport system permease family. (292 aa)    
Predicted Functional Partners:
lptB
Lipopolysaccharide export system ATP-binding protein LptB.
 
 
 0.999
OPJ55960.1
Leucine/isoleucine/valine transporter permease subunit; Belongs to the binding-protein-dependent transport system permease family.
 
0.999
braC
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein precursor.
 
 
 0.997
livF
High-affinity branched-chain amino acid transport ATP-binding protein LivF.
 
 
 0.995
cysT
Sulfate transport system permease protein CysT.
      
 0.421
phnV
Putative 2-aminoethylphosphonate transport system permease protein PhnV.
      
 0.418
carB
Carbamoyl-phosphate synthase large chain.
       0.413
carA
Carbamoyl-phosphate synthase small chain; Belongs to the CarA family.
       0.413
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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