Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55979.1Hypothetical protein. (355 aa)    
Predicted Functional Partners:
OPJ55939.1
Hypothetical protein.
  
     0.769
OPJ56738.1
Hypothetical protein; Conserved virulence factor C.
  
     0.724
OPJ55801.1
Hypothetical protein.
  
     0.720
OPJ55938.1
Flagellin N-methylase.
  
     0.715
yrbG_1
Inner membrane protein YrbG.
       0.714
OPJ55940.1
Hypothetical protein.
  
     0.710
xerC_1
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
     0.705
OPJ55366.1
Hypothetical protein.
  
     0.701
OPJ54640.1
Hypothetical protein.
  
     0.689
OPJ55980.1
Haloacid dehalogenase-like hydrolase.
 
     0.669
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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