Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
rocFArginase; Belongs to the arginase family. (299 aa)    
Predicted Functional Partners:
OPJ56505.1
Hypothetical protein; Formiminotransferase domain, N-terminal subdomain.
  
 
  0.877
speA_2
Arginine decarboxylase.
   
 0.845
speA_1
Arginine decarboxylase.
   
 0.801
argH
Argininosuccinate lyase.
     
 0.759
hutI
Imidazolonepropionase.
 
 
 0.754
hutH
Histidine ammonia-lyase.
 
  
 0.717
leuS
leucine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
    
   0.709
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
  
 
 0.708
argF_1
Ornithine carbamoyltransferase.
    
 0.689
OPJ55278.1
Hypothetical protein.
   
    0.624
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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