dck protein (Clostridium thermoalcaliphilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dck

Deoxyadenosine/deoxycytidine kinase. (224 aa)

Predicted Functional Partners:

hndC_1

0.987

hndC_2

0.987

hndA_1

0.976

folK

0.901

dgk

0.900

cmk

0.860

cdd

0.853

tadA_1

0.824

acpP_1

0.752

acpP_2

0.752

Your Current Organism:

Clostridium thermoalcaliphilum

NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
acpP_1	dck	CLOTH_02160	CLOTH_11840	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Deoxyadenosine/deoxycytidine kinase.	0.752
acpP_1	dgk	CLOTH_02160	CLOTH_11830	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Deoxyguanosine kinase.	0.752
acpP_1	hndA_1	CLOTH_02160	CLOTH_04650	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndA.	0.987
acpP_1	hndC_1	CLOTH_02160	CLOTH_04660	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.987
acpP_1	hndC_2	CLOTH_02160	CLOTH_07660	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.987
acpP_2	dck	CLOTH_08980	CLOTH_11840	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Deoxyadenosine/deoxycytidine kinase.	0.752
acpP_2	dgk	CLOTH_08980	CLOTH_11830	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Deoxyguanosine kinase.	0.752
acpP_2	hndA_1	CLOTH_08980	CLOTH_04650	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndA.	0.987
acpP_2	hndC_1	CLOTH_08980	CLOTH_04660	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.987
acpP_2	hndC_2	CLOTH_08980	CLOTH_07660	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	NADP-reducing hydrogenase subunit HndC.	0.987
cdd	dck	CLOTH_02780	CLOTH_11840	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Deoxyadenosine/deoxycytidine kinase.	0.853
cdd	dgk	CLOTH_02780	CLOTH_11830	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	Deoxyguanosine kinase.	0.666
cdd	tadA_1	CLOTH_02780	CLOTH_15730	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	tRNA-specific adenosine deaminase.	0.431
cmk	dck	CLOTH_04840	CLOTH_11840	Cytidylate kinase.	Deoxyadenosine/deoxycytidine kinase.	0.860
cmk	dgk	CLOTH_04840	CLOTH_11830	Cytidylate kinase.	Deoxyguanosine kinase.	0.414
cmk	tadA_1	CLOTH_04840	CLOTH_15730	Cytidylate kinase.	tRNA-specific adenosine deaminase.	0.869
dck	acpP_1	CLOTH_11840	CLOTH_02160	Deoxyadenosine/deoxycytidine kinase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.752
dck	acpP_2	CLOTH_11840	CLOTH_08980	Deoxyadenosine/deoxycytidine kinase.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.752
dck	cdd	CLOTH_11840	CLOTH_02780	Deoxyadenosine/deoxycytidine kinase.	Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.	0.853
dck	cmk	CLOTH_11840	CLOTH_04840	Deoxyadenosine/deoxycytidine kinase.	Cytidylate kinase.	0.860