STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trxB_3Thioredoxin reductase. (414 aa)    
Predicted Functional Partners:
lhgO
L-2-hydroxyglutarate oxidase LhgO.
  
  0.995
hndA_1
NADP-reducing hydrogenase subunit HndA.
  
 
 0.978
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.964
hndC_3
NADP-reducing hydrogenase subunit HndC.
    
 0.954
OPJ56017.1
Hypothetical protein.
 
     0.950
hndC_1
NADP-reducing hydrogenase subunit HndC.
    
 0.947
hndC_2
NADP-reducing hydrogenase subunit HndC.
    
 0.947
pyrK_2
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
 0.863
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
 
 0.854
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.852
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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