Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ56022.1Sodium bile acid symporter family protein. (352 aa)    
Predicted Functional Partners:
sdpR_2
Transcriptional repressor SdpR.
  
  
 0.865
glpF
Glycerol uptake facilitator protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
     
 0.558
sdpR_1
Transcriptional repressor SdpR.
  
  
 0.535
arsA
Arsenical pump-driving ATPase.
     
 0.513
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate.
       0.472
OPJ56024.1
Glycerol-3-phosphate responsive antiterminator.
  
    0.460
arsD
Arsenical resistance operon trans-acting repressor ArsD.
     
 0.452
cadA_1
Cadmium, zinc and cobalt-transporting ATPase.
  
  
 0.442
copA
Copper-exporting P-type ATPase A.
  
  
 0.442
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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