Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
prs_1Ribose-phosphate pyrophosphokinase. (238 aa)    
Predicted Functional Partners:
OPJ56267.1
Late competence development protein ComFB.
  
  
 0.936
OPJ57303.1
Hypothetical protein.
 
 
 0.915
OPJ55593.1
ComEC family competence protein.
 
  
 0.859
OPJ56057.1
Hypothetical protein.
  
    0.847
recD2
ATP-dependent RecD-like DNA helicase; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.843
flgK
Flagellar hook-associated protein 1.
  
    0.800
comM
Competence protein ComM.
 
  
 0.771
flgC
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
   
   0.760
xerC_1
Tyrosine recombinase XerC; Belongs to the 'phage' integrase family.
  
    0.728
flgL
Flagellar hook-associated protein 3; Belongs to the bacterial flagellin family.
  
   0.693
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.