Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ56074.1Hypothetical protein. (247 aa)    
Predicted Functional Partners:
OPJ56757.1
Hypothetical protein.
  
     0.755
murAA_2
UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
     
 0.754
OPJ55070.1
Hypothetical protein.
  
     0.749
OPJ54642.1
Hypothetical protein.
  
     0.748
OPJ56765.1
Hypothetical protein.
  
     0.746
OPJ55090.1
Spore cortex protein YabQ.
  
     0.724
pyrK_1
Dihydroorotate dehydrogenase B, electron transfer subunit.
  
     0.709
lytB_2
Amidase enhancer precursor.
       0.695
OPJ56990.1
Putative stage IV sporulation protein YqfD.
  
     0.679
OPJ54801.1
LysM domain protein.
  
     0.676
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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