STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
degUTranscriptional regulatory protein DegU. (217 aa)    
Predicted Functional Partners:
degS
Signal transduction histidine-protein kinase/phosphatase DegS.
 
 0.999
OPJ56036.1
Blue-light-activated protein.
 
0.991
kinE
Sporulation kinase E.
 
 0.989
OPJ55444.1
Tetratricopeptide repeat protein.
   
 0.982
ydaM_2
Putative diguanylate cyclase YdaM.
 
 0.898
ydaM_1
Putative diguanylate cyclase YdaM.
 
 
 0.854
fliN
Flagellar motor switch protein FliN.
  
 
 0.849
yycG
Sensor histidine kinase YycG.
 
 0.752
glnK
Sensor histidine kinase GlnK.
  
 0.711
kinA
Sporulation kinase A.
  
 0.711
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.