Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OPJ55511.1Divergent AAA domain protein. (381 aa)    
Predicted Functional Partners:
OPJ55442.1
Colicin V production protein.
  
     0.736
OPJ55639.1
Hypothetical protein.
  
     0.732
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
     
 0.637
OPJ57088.1
Flagellar biosynthesis chaperone.
  
     0.604
OPJ55397.1
Hypothetical protein.
 
     0.595
OPJ56046.1
FlgN protein.
  
     0.546
cysL
HTH-type transcriptional regulator CysL; Belongs to the LysR transcriptional regulatory family.
     
 0.542
OPJ56897.1
Hypothetical protein.
  
     0.490
OPJ57090.1
Flagellar hook-length control protein FliK.
  
     0.473
nadD_1
Nicotinate-nucleotide adenylyltransferase.
 
     0.463
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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