STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kal3-aminobutyryl-CoA ammonia lyase. (126 aa)    
Predicted Functional Partners:
kce
3-keto-5-aminohexanoate cleavage enzyme.
  
 0.998
kdd
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
   
 0.950
kamD
D-lysine 5,6-aminomutase alpha subunit.
 
  
 0.941
kamE
D-lysine 5,6-aminomutase beta subunit.
 
     0.941
OPJ55542.1
Hypothetical protein.
 
     0.939
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
   
 0.870
mutS_2
DNA mismatch repair protein MutS.
 
    0.865
kamA
L-lysine 2,3-aminomutase.
 
   
 0.852
ctfB
Butyrate--acetoacetate CoA-transferase subunit B.
  
  
 0.831
mmgB
Putative 3-hydroxybutyryl-CoA dehydrogenase.
  
 
 0.824
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.