STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
kddL-erythro-3,5-diaminohexanoate dehydrogenase. (345 aa)    
Predicted Functional Partners:
kce
3-keto-5-aminohexanoate cleavage enzyme.
 
  
 0.984
kamD
D-lysine 5,6-aminomutase alpha subunit.
 
  
 0.983
kamE
D-lysine 5,6-aminomutase beta subunit.
 
  
 0.983
adhE
Aldehyde-alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 0.960
kal
3-aminobutyryl-CoA ammonia lyase.
 
   
 0.957
OPJ55542.1
Hypothetical protein.
 
     0.955
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 0.933
mutS_2
DNA mismatch repair protein MutS.
 
     0.921
kamA
L-lysine 2,3-aminomutase.
 
   
 0.904
echA8
Putative enoyl-CoA hydratase echA8; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.895
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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