Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OPJ55542.1 | kal | CLOTH_13000 | CLOTH_12940 | Hypothetical protein. | 3-aminobutyryl-CoA ammonia lyase. | 0.939 |
OPJ55542.1 | kamA | CLOTH_13000 | CLOTH_12990 | Hypothetical protein. | L-lysine 2,3-aminomutase. | 0.901 |
OPJ55542.1 | kamD | CLOTH_13000 | CLOTH_13020 | Hypothetical protein. | D-lysine 5,6-aminomutase alpha subunit. | 0.957 |
OPJ55542.1 | kamE | CLOTH_13000 | CLOTH_13030 | Hypothetical protein. | D-lysine 5,6-aminomutase beta subunit. | 0.957 |
OPJ55542.1 | kce | CLOTH_13000 | CLOTH_12950 | Hypothetical protein. | 3-keto-5-aminohexanoate cleavage enzyme. | 0.938 |
OPJ55542.1 | kdd | CLOTH_13000 | CLOTH_12980 | Hypothetical protein. | L-erythro-3,5-diaminohexanoate dehydrogenase. | 0.948 |
OPJ55542.1 | mutS_2 | CLOTH_13000 | CLOTH_13010 | Hypothetical protein. | DNA mismatch repair protein MutS. | 0.953 |
dnaN | mutL | CLOTH_15210 | CLOTH_04530 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA mismatch repair protein MutL; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.984 |
dnaN | mutS_2 | CLOTH_15210 | CLOTH_13010 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA mismatch repair protein MutS. | 0.979 |
dnaN | polA_1 | CLOTH_15210 | CLOTH_12690 | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity. | 0.998 |
kal | OPJ55542.1 | CLOTH_12940 | CLOTH_13000 | 3-aminobutyryl-CoA ammonia lyase. | Hypothetical protein. | 0.939 |
kal | kamA | CLOTH_12940 | CLOTH_12990 | 3-aminobutyryl-CoA ammonia lyase. | L-lysine 2,3-aminomutase. | 0.852 |
kal | kamD | CLOTH_12940 | CLOTH_13020 | 3-aminobutyryl-CoA ammonia lyase. | D-lysine 5,6-aminomutase alpha subunit. | 0.941 |
kal | kamE | CLOTH_12940 | CLOTH_13030 | 3-aminobutyryl-CoA ammonia lyase. | D-lysine 5,6-aminomutase beta subunit. | 0.941 |
kal | kce | CLOTH_12940 | CLOTH_12950 | 3-aminobutyryl-CoA ammonia lyase. | 3-keto-5-aminohexanoate cleavage enzyme. | 0.998 |
kal | kdd | CLOTH_12940 | CLOTH_12980 | 3-aminobutyryl-CoA ammonia lyase. | L-erythro-3,5-diaminohexanoate dehydrogenase. | 0.950 |
kal | mutS_2 | CLOTH_12940 | CLOTH_13010 | 3-aminobutyryl-CoA ammonia lyase. | DNA mismatch repair protein MutS. | 0.865 |
kamA | OPJ55542.1 | CLOTH_12990 | CLOTH_13000 | L-lysine 2,3-aminomutase. | Hypothetical protein. | 0.901 |
kamA | kal | CLOTH_12990 | CLOTH_12940 | L-lysine 2,3-aminomutase. | 3-aminobutyryl-CoA ammonia lyase. | 0.852 |
kamA | kamD | CLOTH_12990 | CLOTH_13020 | L-lysine 2,3-aminomutase. | D-lysine 5,6-aminomutase alpha subunit. | 0.969 |
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