Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
kamDD-lysine 5,6-aminomutase alpha subunit. (518 aa)    
Predicted Functional Partners:
kamE
D-lysine 5,6-aminomutase beta subunit.
 
 0.999
kdd
L-erythro-3,5-diaminohexanoate dehydrogenase.
 
  
 0.983
kamA
L-lysine 2,3-aminomutase.
 
  
 0.969
OPJ55542.1
Hypothetical protein.
 
     0.962
kal
3-aminobutyryl-CoA ammonia lyase.
 
  
 0.950
kce
3-keto-5-aminohexanoate cleavage enzyme.
 
   
 0.950
mutS_2
DNA mismatch repair protein MutS.
 
    0.932
oraE
D-ornithine 4,5-aminomutase subunit beta.
 
 
0.883
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
  0.876
glcB
PTS system glucoside-specific EIICBA component.
    
 0.842
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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