Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fprA1Flavo-diiron protein FprA1. (393 aa)    
Predicted Functional Partners:
OPJ56987.1
Putative superoxide reductase.
 
  
 0.732
rbr1
Rubrerythrin-1.
 
  
 0.683
rd
Rubredoxin.
 
  
 0.674
OPJ55830.1
Bacteriohemerythrin; Oxygen-binding protein. May be involved in a storage mechanism or for delivery to oxygen-requiring enzymes. The oxygen- binding site contains two iron atoms; Belongs to the hemerythrin family.
  
  
 0.639
nasD
Nitrite reductase.
  
  
 0.623
kinE
Sporulation kinase E.
  
 
 0.612
OPJ55551.1
Hypothetical protein.
       0.537
OPJ55549.1
Hypothetical protein.
       0.511
OPJ55550.1
Radical SAM superfamily protein.
       0.511
rng
Ribonuclease G.
       0.510
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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