Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
OPJ55560.1gamma-D-glutamyl-L-diamino acid endopeptidase 1. (309 aa)    
Predicted Functional Partners:
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
 
     0.663
cwlC_1
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
    
 0.581
cwlC_2
Sporulation-specific N-acetylmuramoyl-L-alanine amidase.
    
 0.581
OPJ55397.1
Hypothetical protein.
 
   
 0.490
OPJ56429.1
Chlorophenol reductase precursor.
  
    0.488
OPJ55755.1
Hypothetical protein.
 
  
  0.487
OPJ56305.1
Hypothetical protein.
  
     0.475
gerAB
Spore germination protein A2.
  
     0.460
vanY
D-alanyl-D-alanine carboxypeptidase.
    
  0.444
metG
methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
   
   0.424
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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