Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
comEAComE operon protein 1. (209 aa)    
Predicted Functional Partners:
epsF
Type II secretion system protein F.
  
  
 0.846
epsE
Type II secretion system protein E.
  
  
 0.828
comC
Type 4 prepilin-like protein leader peptide-processing enzyme.
   
  
 0.768
dacF_3
D-alanyl-D-alanine carboxypeptidase DacF precursor; Belongs to the peptidase S11 family.
     
 0.704
prs_1
Ribose-phosphate pyrophosphokinase.
  
  
 0.667
tadA_1
tRNA-specific adenosine deaminase.
  
  
 0.659
selD
Selenide, water dikinase; Synthesizes selenophosphate from selenide and ATP.
       0.617
OPJ56337.1
Hypothetical protein.
  
  
 0.577
OPJ54733.1
Hypothetical protein.
  
  
 0.577
pncC
Nicotinamide-nucleotide amidohydrolase PncC; Belongs to the CinA family.
     
 0.549
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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