Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yycGSensor histidine kinase YycG. (443 aa)    
Predicted Functional Partners:
kinE
Sporulation kinase E.
 
0.989
yycF
Transcriptional regulatory protein YycF.
 
 0.967
phoP
Alkaline phosphatase synthesis transcriptional regulatory protein PhoP.
 0.914
srrA
Transcriptional regulatory protein SrrA.
 0.897
OPJ56036.1
Blue-light-activated protein.
 
 
0.854
cheY_1
Chemotaxis protein CheY.
 
 0.790
cseB
Transcriptional regulatory protein CseB.
  
  
 0.785
OPJ55580.1
Sporulation and spore germination.
  
  
 0.777
cheY_2
Chemotaxis protein CheY.
  
  
 0.763
degU
Transcriptional regulatory protein DegU.
 
 
 0.719
Your Current Organism:
Clostridium thermoalcaliphilum
NCBI taxonomy Id: 29349
Other names: ATCC 51508, CIP 105528, DSM 7309, [. thermoalcaliphilum, [Clostridium] thermoalcaliphilum, strain JW/YL23-2
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